Weekly outline
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【瀏覽課程大綱Syllabus】【列印Print】
- General
The
goal of this course is to instruct students in the use of bioinformatics tools
for biology and aquaculture problem-solving. Students in the course will learn
about relevant bioinformatic principles as well as how to use a variety of
applications for bioinformatic analysis. We will discuss tools and techniques
using biological data for bacterial genomics, metagenomics, transcriptomics,
and species identification. Using a web-based analytical tool, the course will
mix academic lectures with practical tasks. Online tools for analyzing and
interpreting molecular data will be available to the students.
- 1. 17 February - 23 February
Introduction to bioinformatics
- 2. 24 February - 2 March
Application of bioinformatics to various
field
- 3. 3 March - 9 March
Integration of biological data
- 4. 10 March - 16 March
Practical application of Bioinformatics in
aquaculture research
- 5. 17 March - 23 March
Tools for similarity search and sequence alignment
- 6. 24 March - 30 March
Alignment of multiple sequences
- 7. 31 March - 6 April
Introduction_to_sequencing_and_ONT_Part 1
- 8. 7 April - 13 April
Introduction_to_sequencing_and_ONT_Part 2
- 9. 14 April - 20 April
Mid-Term Week- Examination
- 10. 21 April - 27 April
Bacterial genome annotation- A case study
- 11. 28 April - 4 May
Bacterial Virulence determination using fish bacterial genome sequence
- 12. 5 May - 11 May
Metagenomics and its application to microbiome
- 13. 12 May - 18 May
Diversity index analysis in microbial population
- 14. 19 May - 25 May
Introduction to transcriptome analysis
- 15. 26 May - 1 June
Student presentation - research paper discussion
- 16. 2 June - 8 June
Student Hands-on training to analyse bacterial genome_group_1
- 17. 9 June - 15 June
Students_Hands-on training to analyse metagenomics using online resources
- 18. 16 June - 22 June