Weekly outline
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【瀏覽課程大綱Syllabus】【列印Print】
- General
The
goal of this course is to instruct students in the use of bioinformatics tools
for biology and aquaculture problem-solving. Students in the course will learn
about relevant bioinformatic principles as well as how to use a variety of
applications for bioinformatic analysis. We will discuss tools and techniques
using biological data for bacterial genomics, metagenomics, transcriptomics,
and species identification. Using a web-based analytical tool, the course will
mix academic lectures with practical tasks. Online tools for analyzing and
interpreting molecular data will be available to the students.
- 1. 19 February - 25 February
Introduction to bioinformatics
- 2. 26 February - 3 March
Application of bioinformatics to various
field
- 3. 4 March - 10 March
Integration of biological data
- 4. 11 March - 17 March
Practical application of Bioinformatics in
aquaculture research
- 5. 18 March - 24 March
Tools for similarity search and sequence alignment
- 6. 25 March - 31 March
Alignment of multiple sequences
- 7. 1 April - 7 April
Introduction_to_sequencing_and_ONT_Part 1
- 8. 8 April - 14 April
Introduction_to_sequencing_and_ONT_Part 2
- 9. 15 April - 21 April
Mid-Term Week- Examination
- 10. 22 April - 28 April
Bacterial genome annotation- A case study
- 11. 29 April - 5 May
Bacterial Virulence determination using fish bacterial genome sequence
- 12. 6 May - 12 May
Metagenomics and its application to microbiome
- 13. 13 May - 19 May
Diversity index analysis in microbial population
- 14. 20 May - 26 May
Introduction to transcriptome analysis
- 15. 27 May - 2 June
Student presentation - research paper discussion
- 16. 3 June - 9 June
Student Hands-on training to analyse bacterial genome_group_1
- 17. 10 June - 16 June
Students_Hands-on training to analyse metagenomics using online resources
- 18. 17 June - 23 June